Lines Matching refs:scaffIndex
417 int *scaffIndex; member
5419 if (dtd->scaffIndex) { in doProlog()
5431 parser, dtd->scaffIndex, parser->m_groupSize * sizeof(int)); in doProlog()
5434 dtd->scaffIndex = new_scaff_index; in doProlog()
5450 assert(dtd->scaffIndex != NULL); in doProlog()
5451 dtd->scaffIndex[dtd->scaffLevel] = myindex; in doProlog()
5470 && (dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel - 1]].type in doProlog()
5472 dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel - 1]].type in doProlog()
5616 dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel - 1]].type in doProlog()
5682 dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel]].quant = quant; in doProlog()
6868 p->scaffIndex = NULL; in dtdCreate()
6907 ms->free_fcn(p->scaffIndex); in dtdReset()
6908 p->scaffIndex = NULL; in dtdReset()
6943 ms->free_fcn(p->scaffIndex); in dtdDestroy()
7083 newDtd->scaffIndex = oldDtd->scaffIndex; in dtdCopy()
7575 if (! dtd->scaffIndex) { in nextScaffoldPart()
7585 dtd->scaffIndex = (int *)MALLOC(parser, parser->m_groupSize * sizeof(int)); in nextScaffoldPart()
7586 if (! dtd->scaffIndex) in nextScaffoldPart()
7588 dtd->scaffIndex[0] = 0; in nextScaffoldPart()
7626 = &dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel - 1]]; in nextScaffoldPart()